The first CoLoMoTo meeting was held at IGC, Instituto Gulbenkian de Ciência, Oeiras, Portugal 18-19 November 2010.
Also see the minutes of the discussions.
Program
Thurday, 18
| Time |
Topic |
| 14:00-14:15 |
C. Chaouiya: welcoming and brief overview of qualitative modelling formalisms, similarities and differences |
| 14:15-14:45 |
A. Naldi: GINsim, implementation and functionalities |
| 14:45-15:20 |
T. Helikar: Chemchains, implementation and functionalities |
| 15:20-15:40 |
A. Zinovyev: Binom, implementation and functionalities |
| 15:40-16:10 |
Coffee break |
| 16:10-16:30 |
J. Wu: CellNetOptimizer, implementation and functionalities |
| 16:30-17:00 |
A. Von Kamp: CellNetAnalyzer, implementation and functionalities |
| 17:00-17:30 |
I. Xenarios: Squad, implementation and functionalities |
| 17:30-17:45 |
I. Xenarios: Biocuration |
| 17:45-18:15 |
P. Monteiro: GNA, model checking |
| 18:15-19:00 |
Open discussion |
| 19:00 |
Cocktail |
Friday, 19
| Time |
Topic |
| 10:00-10:20 |
B. Schwikowski: Cytoscape, a succesful story! |
| 10:20-10:45 |
C. Chaouiya, D. Berenguier: SBML Level 3 quali package |
| 10:40-11:00 |
Coffee break |
| 11:00-12:00 |
General discussion, objectives and strategy |
| 12:00-14:30 |
IGC seminar + Lunch |
| 14:30-16:30 |
Round table on technical issues and strategies - conclusions |
Participants
- Duncan Berenguier TAGC, IML, Marseille, FR
- Jorge Carneiro IGC Oeiras PT
- Claudine Chaouiya IGC Oeiras PT
- Tomas Helikar University of Nebraska USA
- Pedro Monteiro IMM Lisboa PT
- Aurélien Naldi CIG Lausanne, CH
- Anne Niknejad ISB-SIB Lausanne, CH
- Manuel Pita IGC Oeiras PT
- Martial Sankar ISB-SIB Lausanne, CH
- Benno Schwikowski Pasteur, Paris FR
- Denis Thieffry ENS, Paris FR
- Laurent Tichit IML Marseille FR
- Axel Von Kamp MPI Magdeburg, DE
- Jerry Wu EBI Cambridge, UK
- Ioannis Xenarios ISB-SIB Lausanne, CH
- Andrei Zynoviev Curie, Paris, FR
Funding and Acknowledgements
IGC, ENFIN, French Embassy in Portugal, City of Oeiras